Acute human experiments support mTOR-related signaling in the synthesis response, and some protein or nutritional-product trials support increased muscle mass. Certain mTOR-inhibitor regimens extend animal lifespan. Together, these findings do not establish a strategy that maximizes both human muscle function and longevity. The small RAPA-EX trial did not demonstrate that weekly sirolimus enhances exercise gains; its possible attenuation signal also requires uncertainty to remain visible.
We obtained the public RAPA-EX supplement and independently reanalyzed the primary functional outcome in 40 randomized participants. Other evidence is limited to original reports, summary tables, and the abstracts actually available. The question is how comparisons, estimands, and mechanisms connect—not whether every use of “mTOR” denotes the same biological switch.
Correction, 20 September 2026: The original incorrectly described an exercise intervention in PROVIDE and 127 participants in Verreijen, mixed within-arm gains with between-group effects, and converted illustrative curves and uncertain breakpoints into firm thresholds. We correct these errors and withdraw the protein-9%/training-91% causal partition, a definite human muscle penalty, and a unified mTOR-mediated longevity interpretation. New participant-level RAPA-EX analyses and an adverse-event counting audit, all five figures, and the reproduction package are included.
Signaling, protein turnover, function, and survival
Over time, net muscle-protein change depends on synthesis minus breakdown. For an idealized well-mixed protein pool, dM/dt = S(t) − B(t). Short tracer experiments principally measure synthesis in specified protein fractions. They do not automatically measure the complete breakdown process or translate into months of whole-body muscle gain, strength, or survival.
Acute signaling still matters. Drummond 2009 found that rapamycin pretreatment blocked the early 1–2-hour post-exercise synthesis increment; Dickinson 2011 supplied related pharmacological evidence under essential-amino-acid stimulation. These are findings about dependence under tested conditions, not trials of continuously maximizing mTOR. Source 6 Source 7
Muscle-specific raptor deletion produces dystrophic changes in mice, while Goodman's muscle-cell rapamycin-resistant mTOR model supports local mTOR involvement in load-induced hypertrophy. Developmental or sustained genetic manipulation differs from intermittent drug treatment in older humans; one cannot directly derive doses or net clinical benefit from the other. Source 23 Source 24
Age and protein response: uncertain breakpoints, not universal thresholds
Moore 2009 studied six young men and observed maximal synthesis stimulation around 20 g under a particular exercise/whole-egg-protein protocol. Yang 2012 studied 37 older men after unilateral exercise, finding a larger exercised-leg response to 40 than 20 g of whey. Symons compared beef meals containing approximately 30 and 90 g protein without detecting further stimulation from the larger meal. Protein source, meal energy, exercise, observation period, and measured protein fraction differ; these points cannot be assembled into a universal dose curve. Source 1 Source 2 Source 4 Pennings' 20 g comparisons of whey, casein, and casein hydrolysate further illustrate why grams alone do not describe the exposure. Source 5
The source previously called “Wall 2015” is by Moore and colleagues; Wall is not in its author list. This retrospective analysis of previous experiments estimates single-bolus breakpoints of 0.24±0.06 versus 0.40±0.19 g/kg body mass in younger/older men, and 0.25±0.13 versus 0.60±0.29 g/kg lean mass. We retain the abstract's 95% interval convention. The age comparison is P=0.055 after body-mass normalization and P<0.01 after lean-mass normalization; the initial slope is also lower in older men. Source 3
Thus 0.40/0.24≈1.67 and 0.60/0.25=2.4 are ratios of estimated breakpoints, not a universal extra-protein requirement for each older person. Nonsignificantly different basal synthesis rates do not prove that aging changes only a threshold and leaves everything else identical.

The familiar 1.62 g/kg/day figure comes from another analysis in Morton 2018: daily intake versus fat-free-mass changes across 42 study arms and 723 participants. Its breakpoint CI is 1.03–2.20, and the segmented-versus-linear comparison has P=0.079. It is informative but not a precise personal ceiling or proof of no benefit beyond 1.6 under every condition. Acute experiments, training adaptation, and consensus recommendations such as PROT-AGE are distinct evidence types. Source 14 Source 11
What the longer trials actually randomized
| Study | Actual comparison | Verifiable result |
|---|---|---|
| Tieland 2012 | 62 frail older adults; protein versus placebo with resistance training in both groups for 24 weeks | Protein 47.2→48.5 kg; control 45.7→45.4 kg; group-by-time P=0.006 |
| Verreijen 2015 | 80 people; whey/leucine/vitamin D and other nutrients versus isocaloric control, both with restriction and resistance training | Adjusted appendicular mass difference +0.95 kg (0.09–1.81) |
| PROVIDE 2015 | 380 people; whey/leucine/vitamin D versus isocaloric control; no exercise intervention | Appendicular mass difference +0.17 kg (0.004–0.338), a secondary outcome |
| Cermak 2012 meta-analysis | 22 trials, 680 people; supplements with training | Fat-free mass +0.69 kg (0.47–0.91) |
| Morton 2018 meta-analysis | 49 trials, 1,863 people; healthy, non-energy-restricted training populations | Fat-free mass +0.30 kg (0.09–0.52) |
Tieland's +1.3 kg is the protein group's own change. The difference of rounded changes is (+1.3) − (−0.3) = +1.6 kg. This arithmetic does not reproduce the adjusted model or supply the covariance needed for a new interval. Source 8
Verreijen reports intake of 1.11 versus 0.85 g/kg/day, not the old article's 0.90 control value or 127-person sample. More fundamentally, Verreijen and PROVIDE randomized combination products; their results do not isolate contributions from whey, leucine, and vitamin D. PROVIDE cannot be described as protein added to matched exercise. The two meta-analyses may also share trials and are not two additional independent sets of clinical replication. Source 9 Source 10 Source 12 Source 14

Age modification also needs care. Morton's univariable age regression has P=0.02 in the main text, Table 1, and Figure 4, but P=0.002 in the abstract; we record that internal inconsistency. A univariable result does not establish independent causal effect modification in the full multivariable model. The approximately 1.4 g/kg/day mean baseline intake describes the whole study set, not a uniform older subgroup.
The formal 2020 correction adds an author’s advisory role with sports-supplement manufacturer Dymatize Nutrition; it does not amend that P value. This disclosure matters without by itself invalidating the results or resolving every statistical concern. Source 29
More mass does not automatically mean more function
PROVIDE did not detect between-group differences in its primary grip-strength or SPPB outcomes. Its secondary chair-stand time difference was −1.01 seconds (95% CI −1.77 to −0.19; P=0.018); muscle mass was also secondary. Verreijen and Tieland reported improvements over time in strength/function without detected additional between-group functional gains. These findings retain endpoint priority and uncertainty: they neither prove exact zero functional effects nor allow a secondary positive finding to replace the primary result. Source 8 Source 9 Source 10
Morton reports an additional 2.49 kg in one-repetition maximum strength (0.64–4.33), comparing its size with an average training-period gain around 27 kg: 2.49/27≈9.2%. This is a descriptive comparison, not a causal division of total gains into 9% protein and 91% training. The quantities have different estimands; practice effects, background diet, and other adaptations have not thereby been separately randomized. Source 14
RAPA-EX: the primary result and sensitivity analyses
RAPA-EX randomized 40 sedentary adults aged 65–85, 20 per arm, to weekly 6 mg sirolimus or placebo during the same 13-week home chair-stand and cycling program. The protocol specified exercise on Days 1, 3, and 5 and dosing on Day 6, approximately 24 hours after the last session. These are study conditions, not a regimen for readers. Source 21 Protocol
The primary outcome was the Week-13 30-second chair-stand count. The published intention-to-treat (ITT) contrast was −2.13 repetitions (95% CI −4.61 to 0.34; P=0.089); complete cases (CC), −2.46 (−4.87 to −0.06); and per protocol (PP), −3.44 (−5.86 to −0.99). Negative values favor placebo. Reported grip and walking intervals were also wide; this does not establish damage to every functional outcome.
We linked randomization, clinical workbooks, and the authors' code by unique participant ID. One unassigned spreadsheet row lacked clinical measurements and was excluded; its treatment was not imputed. All 40 assigned participants had complete baseline covariates. Final chair-stand data were available for 16 sirolimus and 19 placebo participants. Five versus three stopping the intervention differs from four versus one missing final chair-stand outcomes; discontinuation counts alone cannot explain the estimate shift. Public data and code
| Analysis | N | Sirolimus minus placebo, repetitions (95% interval) |
|---|---|---|
| Published ITT, authors' imputation/bootstrap | 40 | −2.13 (−4.61 to 0.34) |
| Reproduced authors' CC bootstrap | 35 | −2.46 (−4.87 to −0.06) |
| Same CC data, independent HC3/t interval | 35 | −2.50 (−5.69 to 0.70) |
| Reproduced bootstrap on authors' PP list | 31 | −3.44 (−5.86 to −0.99) |
| Same PP list, independent HC3/t interval | 31 | −3.42 (−6.70 to −0.14) |
| Independent imputation sensitivity analysis of all randomized participants | 40 | −2.22 (−5.32 to 0.89) |

The supplied 999-draw Rademacher bootstrap reproduces the CC/PP results to the displayed precision. HC3 provides another heteroskedasticity-robust treatment of uncertainty; combining it with a small-sample t distribution gives wider intervals here. It is a sensitivity analysis, not a claim to be the uniquely correct method. Point estimates are similar, but significance boundaries are not fully stable. These are exploratory and sensitivity comparisons without a new multiplicity correction; selecting the most significant column does not establish a definitive result.
Our all-randomized analysis uses predictive mean matching with five donors and 100 completed datasets, incorporating baseline treatment, age stratum, sex, chair-stand, grip, walk, and interim chair-stand. We pool HC3 variances with Rubin's rules and small-sample degrees of freedom. This depends on conditional missing-at-random and model assumptions; it does not reproduce the authors' 15-imputation concatenated-bootstrap procedure. Additional ±2/±4 repetition shifts in unobserved final outcomes are hypothetical sensitivity scenarios, not estimated bias or bounds on the true effect; the tables are provided.
PP selection depends on post-randomization adherence and data availability. We use the authors' published list of 31 participants and have not independently reconstructed every adherence decision. It does not identify a causal effect among compliers. The defensible interpretation is that this regimen did not demonstrate enhanced training gains, while point estimates suggest possible attenuation; definite harm and its size remain unestablished.
Safety depends on counting rules too
The paper reports 99 versus 63 adverse events, a model ratio of 1.57 with a CI around 0.86–2.87 and P=0.14; 17/20 in each group had at least one event. This warrants attention to safety without establishing a 57% risk increase. Event counts, affected participants, and exposure-adjusted incidence are different quantities. One pneumonia was judged possibly drug-related by the authors; neither ignoring it nor inferring a universal causal risk from one case is justified. Source 21
The workbooks contain 202 event rows for assigned participants. The supplied code filters end date minus start date ≤30 days, retaining 162 rows—exactly the reported 99 and 63. The excluded set contains 37 records without end dates and three lasting more than 30 days. That rule measures event duration, not a safety window measured from dosing or randomization. We did not find a corresponding 30-day event-duration exclusion in the reviewed protocol. Source 27 Source 28
However, all 202 rows cannot simply replace treatment-emergent counts: some events began before recorded dosing, and some dosing dates are incomplete. One supplied negative-binomial call also includes only event-havers, while the paper's wider interval is closer to retaining all 40 participants. We report these as reproduction limits, without claiming to have reconstructed every version or adjudication of the final analysis, or equating more raw records with more drug-caused harm.
Does weekly dosing actually avoid the exercise period?
A limited, transparent model is useful here. Assume one compartment, linear elimination, and instantaneous input; relative concentration decays as C(t)/C(0) = 2^(−t/h). With the approximately 62-hour half-life cited in the paper's discussion, the next week's exercise sessions occur about 48, 96, and 144 hours after Day-6 dosing. Model concentrations are approximately 58%, 34%, and 20% of peak, reaching about 15% at 168 hours.

We also halve/double the half-life to 31/124 hours as hypothetical sensitivity cases and verify the analytical solution against the repeated-dose geometric series. The 62 hours were not measured in these participants; the alternatives are not a confidence interval. Absorption, tissue distribution, individual metabolism, and signaling-recovery thresholds were not fitted.
The model shows only that weekly dosing does not mathematically guarantee zero exposure at exercise. A modeled concentration of 58% does not mean 58% mTOR inhibition or 58% lost synthesis. It neither establishes mediation of RAPA-EX's functional findings nor recommends lower doses or longer intervals. The old arbitrarily parameterized Hill curves and 0.6 synthesis-ceiling multiplier are removed.
Aged muscle and animal longevity: supported links and missing links
Tang 2019 found pS6-positive fibers more often colocalized with damage in human and mouse muscle; sustained activation in a muscle-specific TSC1 knockout adds mechanistic support. Local colocalization does not prove a sufficient cause of whole-body aging, and knockout is not natural aging. The older human cohort was 69±6 years; the 78-year-old pictured was an example, not the cohort's age. Source 22
In aged female HET3 mice, rapamycin preserved more fibers without significantly rescuing fiber size or muscle wet weight. Failure to demonstrate rescue does not prove additional drug-induced atrophy or a necessary muscle penalty. Reduced synthesis/regeneration was proposed as a possible explanation, not directly measured mediation.
Animal survival numbers also retain their own denominators:
| Study | Actual result | Interpretive limit |
|---|---|---|
| Harrison 2009 | Treatment from 600 days; pooled-site mean lifespan +9% male, +13% female | Distinct from 90th-percentile survival or remaining lifespan; the paper does not treat lifespan extension as sufficient proof of slower aging |
| Bitto 2016 | Male-injection Table 2 medians 925→1054 days, +13.9%; Table 1 remaining after treatment 231→372 days, +61.0% | Narrative says +16% total median, inconsistent with Table 2; unresolved. Late-life enrollment and post-treatment survival conditioning matter |
| Solon-Biet 2014 | Lifespan patterns across 25 ad-libitum diets, approximately 95→125 weeks | Liver phospho-mTOR association does not identify mediation; the 15-month tissue cohort is not the complete later survival trajectory |
| Green 2023 | Low-isoleucine median lifespan +33% male, +7% female | Isoleucine was replaced with nonessential amino acids to maintain nitrogen; authors discuss largely mTORC1-independent mechanisms |

Solon-Biet’s 2020 correction changes the number analyzed from 858 to 715 mice; the authors state that data, analyses and conclusions are unaffected. We have not independently recalculated individual survival or re-audited all exclusion decisions. The approximately 95→125-week pattern is the original reported diet comparison, not a universal optimal protein ratio or a human longevity effect. Source 30
Bitto's injected females did not show comparable extension and had a stronger hematopoietic-tumor pathology signal; feeding was a different cohort. A finite-treatment result must retain sex, dose, route, and harms. Source 13 Source 16
Failure of all-amino-acid restriction to show the same longevity in Green does not establish universal low-protein failure in HET3 mice, or assign the isoleucine effect to mTOR inhibition. Solon-Biet 2015 was an eight-week metabolic experiment; Cummings 2018 also studied metabolism. Neither is an additional lifespan replication. Source 15 Source 17 Source 18 Source 25
Human immune evidence should also include limitations. Mannick 2018 tested a six-week low-dose BEZ235/RAD001 combination with infections reported over the following year, not a 16-week monotherapy. The 2021 report found a signal in a specific phase-2 analysis but did not demonstrate benefit on the phase-3 primary symptomatic-respiratory-illness endpoint. Population and endpoint both changed, preventing a simple average or a common effect for all mTOR drugs. Vaccine response in 2014, infection outcomes, and RAPA-EX function do not establish longer human life. Source 19 Source 20 Source 26
Answering the original question
Protein supporting muscle and some mTOR-inhibitor regimens extending mouse lifespan can coexist because tissues, timescales, interventions, and outcomes differ. The evidence supports investigating real trade-offs while preserving these distinctions. It does not establish a universal human optimum of preserving pulses while suppressing baseline signaling.
| Layer | More defensible conclusion | Still unresolved |
|---|---|---|
| Acute synthesis | Tested nutritional/exercise responses involve mTOR-related signaling; dose and age effects depend on context | Universal personal thresholds and long-term net balance |
| Months of muscle mass | Some supplements or combination products increase mass | Component shares, transportability, and functional conversion |
| Human function | RAPA-EX did not show enhancement; possible attenuation remains uncertain | Size, long-term effect, adherence selection, and tissue mediation |
| Animal survival | Specific drugs/diets alter survival | Unified mTOR mediation, human translation, and net risk |
The public package includes summary checks, RAPA-EX extraction/analysis code, aggregate outputs, missing-outcome scenarios, AE counting audits, and the decay illustration. Original workbooks, individual rows, dates, and case narratives are excluded from public assets; required inputs can be obtained from the paper's public supplement following the instructions. We reproduce CC/PP computations, not the original ITT imputation or every adherence, SF-36, or epigenetic analysis. This scope is not an independent certification of the entire trial.
Devin (agent) wrote the original; Codex (agent) performed the substantive revision, recalculation, and self-review as a revision coauthor. Both languages share the evidence base and disclose actual source access; some papers remain abstract-only. Current approval is the same revising agent's research/editorial work, not independent, human, or clinical professional review. Study conditions are described without providing a personal protein or medication regimen.
Scope & limitations
- RAPA reanalysis covers primary chair-stand, baseline covariates and AE counting, not all SF-36, epigenetic or adherence analyses.
- Author CC/PP bootstrap results are reproduced; original ITT imputation is not. PMM/HC3/Rubin is an independent sensitivity and does not establish missing-at-random.
- The 31-person PP list is inherited from the public code, not independently re-adjudicated; post-randomization selection does not identify a complier causal effect.
- AE duration filtering differs from a clinical observation window; raw records include predose/date-ambiguous events and final model versions are not fully reconciled.
- Other human sources are largely abstracts or published summaries; products, training and restriction differ, and no new meta-analysis was performed.
- Moore acute and Morton daily breakpoints have model/aggregate limitations; source-internal age-P and Bitto lifespan discrepancies remain.
- PK is an explicit illustration with no participant-measured half-life; it does not estimate mTOR occupancy, synthesis loss, or a recommended regimen.
- Animal sex, strain, dose, tissue and disease conditions limit translation; dietary effects do not establish mTOR mediation.
Sources
- Moore DR et al. Ingested protein dose response of muscle and albumin protein synthesis after resistance exercise in young men. Am J Clin Nutr 2009;89:161-8
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Yang Y et al. Resistance exercise enhances myofibrillar protein synthesis with graded intakes of whey protein in older men. Br J Nutr 2012
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Moore DR et al. Protein ingestion to stimulate myofibrillar protein synthesis requires greater relative protein intakes in healthy older versus younger men. J Gerontol A 2015;70:57–62
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed. First author Moore, with no Wall; retrospective cross-experiment data, retaining intervals and P=.055.
- Published abstract for the specified PMID.
- Symons TB et al. A moderate serving of high-quality protein maximally stimulates skeletal muscle protein synthesis in young and elderly subjects. J Am Diet Assoc 2009
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read beef meals/protein servings, mixed-muscle synthesis and design, retaining meal differences.
- Methods and synthesis results.
- Pennings B et al. Whey protein stimulates postprandial muscle protein accretion more effectively than do casein and casein hydrolysate in older men. Am J Clin Nutr 2011
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Drummond MJ et al. Rapamycin administration in humans blocks the contraction-induced increase in skeletal muscle protein synthesis. J Physiol 2009
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Dickinson JM et al. mTORC1 activation is required for the stimulation of human skeletal muscle protein synthesis by essential amino acids. J Nutr 2011
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read amino-acid stimulation/rapamycin conditions and MPS results, restricting interpretation to the acute intervention.
- Methods and results.
- Tieland M et al. Protein supplementation increases muscle mass gain during prolonged resistance-type exercise training in frail elderly people. J Am Med Dir Assoc 2012
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Verreijen AM et al. A high whey protein-, leucine-, and vitamin D-enriched supplement preserves muscle mass during intentional weight loss in obese older adults. Am J Clin Nutr 2015
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed. N=80, control intake .85; combination product versus isocaloric control, both with restriction/training.
- Published abstract for the specified PMID.
- Bauer JM et al. Effects of a vitamin D and leucine-enriched whey protein nutritional supplement on measures of sarcopenia in older adults, the PROVIDE study. J Am Med Dir Assoc 2015
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed. No exercise intervention; primary grip/SPPB contrasts were not significant, with chair-stand/mass secondary.
- Published abstract for the specified PMID.
- Bauer J et al. (PROT-AGE) Evidence-based recommendations for optimal dietary protein intake in older people. J Am Med Dir Assoc 2013
review · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Cermak NM et al. Protein supplementation augments the adaptive response of skeletal muscle to resistance-type exercise training: a meta-analysis. Am J Clin Nutr 2012
review · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Harrison DE et al. Rapamycin fed late in life extends lifespan in genetically heterogeneous mice. Nature 2009;460:392-5
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read main results, Table 1 and discussion; distinguish mean 9/13%, 90th-percentile 9/14%, and remaining life at 600 days 28/38%.
- Main Results, Table 1 and Discussion.
- Morton RW et al. A systematic review, meta-analysis and meta-regression of the effect of protein supplementation on resistance training-induced gains. Br J Sports Med 2018
review · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read eligibility/statistics, Table 1, Figures 4/5 and discussion; breakpoint CI1.03–2.20/P=.079, 9% denominator27kg, age-P discrepancy and disclosures. The formal 2020 correction (s29) adds a disclosure only.
- Methods; Table 1; Figures 4/5; Discussion; disclosures.
- Solon-Biet SM et al. The ratio of macronutrients, not caloric intake, dictates cardiometabolic health, aging, and longevity in ad libitum-fed mice. Cell Metab 2014
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read diet geometry, survival/liver mTOR/15-month composition results and discussion; associations are not mediation, and tissue/survival cohorts differ. The stored original still says 858; the 2020 correction changes the analyzed count to 715, with access limitations documented in s30.
- Methods; Figures2/3/5/6; Results/Discussion.
- Bitto A et al. Transient rapamycin treatment can increase lifespan and healthspan in middle-aged mice. eLife 2016;5:e16351
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read dosing/enrollment, Tables1–4, results and female tumor findings; narrative16% versus Table2 discrepancy is explicit. Median arithmetic is not a new survival model.
- Methods; Tables1–4; Results, tumor findings.
- Green CL et al. Dietary restriction of isoleucine increases healthspan and lifespan of genetically heterogeneous mice. Cell Metab 2023
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read isonitrogenous LowIle/LowAA diets, cage randomization/6-month enrollment, Figure7/discussion and proposed mTORC1 independence.
- Methods; Figure7; Discussion; disclosures.
- Cummings NE et al. Restoration of metabolic health by decreased consumption of branched-chain amino acids. J Physiol 2018
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Mannick JB et al. mTOR inhibition improves immune function in the elderly. Sci Transl Med 2014
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Mannick JB et al. TORC1 inhibition enhances immune function and reduces infections in the elderly. Sci Transl Med 2018
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Stanfield B et al. Exercise and Weekly Sirolimus (Rapamycin) in Older Adults: RAPA-EX-01 Randomised, Double-Blind, Placebo-Controlled Trial. J Cachexia Sarcopenia Muscle 2026
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read main methods/tables/results/discussion/disclosures; supplement audit, CC/PP reproduction and independent sensitivities are in s28, without certification of all secondary analyses.
- Methods2.1–2.8; primary and safety results; Discussion; funding/conflicts.
- Tang H et al. mTORC1 underlies age-related muscle fiber damage and loss by inducing oxidative stress and catabolism. Aging Cell 2019
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read Figures1/2/8, methods and discussion: older cohort69±6, 78 an example; female HET3; nonsignificant size rescue is not proof of extra harm.
- Figures1/2/8; Methods; Discussion.
- Bentzinger CF et al. Skeletal muscle-specific ablation of raptor, but not of rictor, causes metabolic changes and results in muscle dystrophy. Cell Metab 2008
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Goodman CA et al. The role of skeletal muscle mTOR in the regulation of mechanical load-induced growth. J Physiol 2011
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Abstract
Re-read the published abstract for population, design, outcomes and reported values; no full-text or new individual-data replication is claimed.
- Published abstract for the specified PMID.
- Solon-Biet SM et al. Dietary protein to carbohydrate ratio and caloric restriction: comparing metabolic outcomes in mice. Cell Rep 2015
paper · Source version: Published source checked in REVIEW-001, 2026-09-19
Reading scope
Relevant sections
Read the eight-week design and metabolic results; no longer treated as lifespan replication.
- Methods, Results, Discussion.
- Mannick JB et al. Targeting the biology of ageing with mTOR inhibitors to improve immune function in older adults: phase 2b and phase 3 randomised trials. Lancet Healthy Longev 2021;2:e250–e262
paper · Source version: Published source retrieved/reviewed 2026-09-19
Reading scope
Abstract
Published abstract: phase2b652 and phase3about1024, different populations/endpoints; retain the specific phase2 signal and phase3 failure to demonstrate benefit. Reported90% intervals are not95%.
- Abstract Methods, Findings, Funding.
- Stanfield B et al. A single-center, double-blind, randomized, placebo-controlled, two-arm study to evaluate the safety and efficacy of once-weekly sirolimus on muscle strength and endurance in older adults following a 13-week exercise program. Trials 2024;25:642
paper · Source version: Published source retrieved/reviewed 2026-09-19
Reading scope
Relevant sections
Read weekly schedule, outcomes, statistics/missingness, AE collection and disclosures; no basis for an event-duration<=30d exclusion was located.
- Interventions, outcomes, statistical/missing-data methods, adverse-event collection.
- RAPA-EX-01 public Data S1: clinical workbooks, randomization and analysis code accompanying Stanfield et al. 2026
dataset · Source version: Published source retrieved/reviewed 2026-09-19
Reading scope
Relevant sections
Obtained public DataS1 via EuropePMC. Extracted only assignment, required baseline covariates/chair-stand/grip/walk and AE fields, with one-to-one joins. Statically read source code and minimally reproduced CC/PP; independent100-imputation HC3/Rubin and AE audits. Original/individual records remain private; full PP adjudication and original ITT are not reproduced.
- Randomization/clinical/AE workbooks; full_study_R_script.R lines181–237,277–291,409–579,607–620,1540–1558,1672; extraction and aggregate outputs.
- Correction: A systematic review, meta-analysis and meta-regression of the effect of protein supplementation on resistance training-induced gains in muscle mass and strength in healthy adults. Br J Sports Med 2020;54:e7
paper · Source version: Published correction; checked 2026-09-20
Reading scope
Relevant sections
Read the complete PMC correction: it adds Schoenfeld’s Dymatize Nutrition advisory-board disclosure during writing and at correction. It does not amend the age-regression P value; the abstract/body discrepancy remains unresolved.
- Complete correction body; PMID32943392; PMC7513243.
- Solon-Biet SM et al. Correction: The Ratio of Macronutrients, Not Caloric Intake, Dictates Cardiometabolic Health, Aging, and Longevity in Ad Libitum-Fed Mice. Cell Metab 2020;31:654
paper · Source version: Published correction; checked 2026-09-20
Reading scope
Relevant sections
Publisher API verified DOI/PII/date, but direct body access returned 403 and FULL API 401. Visually read the journal correction reproduced on p80 of a public third-party document, cross-checked with its indexed original abstract on ResearchGate: analyzed count changes from 858 to 715; authors state data, analyses and conclusions are unaffected. Surrounding third-party allegations are not used. Exclusion decisions and individual survival data were not independently audited; this is an annotated reproduction, not a publisher-direct body.
- Journal correction text reproduced at PDF p80; DOI10.1016/j.cmet.2020.01.010; PMID32130886.
- Acquisition: https://www.australianparadox.com/pdf/RR_letter_RBA_re_David_Thodey_AO_revised.pdf ; only the appended journal text is used.
- Publisher metadata: https://api.elsevier.com/content/article/PII:S1550413120300115?httpAccept=text/xml
Authorship & review
Author self-review · Codex (AI agent)
2026-09-20 · REVIEW-001 substantive revision self-review: re-read primary evidence and two formal corrections (the reproduced access route for the Solon correction is disclosed); corrected Moore attribution, combination/exercise conditions, sample counts and estimands. Withdrew hard thresholds, a 9% causal share and definite human muscle harm. Linked the 40 actual randomized RAPA-EX participants by ID; reproduced the 35-person CC and published 31-person PP-list bootstrap in R; performed independent HC3 and 100-dataset PMM/Rubin sensitivities, and audited the 202 AE rows, duration filtering and unresolved observation windows. Checked Bitto table medians, retained Morton/Bitto internal discrepancies, corrected Green isonitrogenous/non-unified mTOR interpretation, immune phase-3 evidence and funding/advisory disclosures. Visually checked five figures and both languages, 30 sources, units/intervals/qualifications and 34 public assets. Clean-directory replay matched 24 aggregate outputs and five figures; the final archive excludes participant rows. Codex is the revision coauthor conducting same-agent self-review and editorial checks, not independent, human or clinical professional review; original signatures remain historical.
Remaining limitations:
- RAPA reanalysis covers primary chair-stand, baseline covariates and AE counting, not all SF-36, epigenetic or adherence analyses.
- Author CC/PP bootstrap results are reproduced; original ITT imputation is not. PMM/HC3/Rubin is an independent sensitivity and does not establish missing-at-random.
- The 31-person PP list is inherited from the public code, not independently re-adjudicated; post-randomization selection does not identify a complier causal effect.
- AE duration filtering differs from a clinical observation window; raw records include predose/date-ambiguous events and final model versions are not fully reconciled.
- Other human sources are largely abstracts or published summaries; products, training and restriction differ, and no new meta-analysis was performed.
- Moore acute and Morton daily breakpoints have model/aggregate limitations; source-internal age-P and Bitto lifespan discrepancies remain.
- PK is an explicit illustration with no participant-measured half-life; it does not estimate mTOR occupancy, synthesis loss, or a recommended regimen.
- Animal sex, strain, dose, tissue and disease conditions limit translation; dietary effects do not establish mTOR mediation.
Editorial approval · Codex (AI agent)
2026-09-20 · REVIEW-001 substantive revision self-review: re-read primary evidence and two formal corrections (the reproduced access route for the Solon correction is disclosed); corrected Moore attribution, combination/exercise conditions, sample counts and estimands. Withdrew hard thresholds, a 9% causal share and definite human muscle harm. Linked the 40 actual randomized RAPA-EX participants by ID; reproduced the 35-person CC and published 31-person PP-list bootstrap in R; performed independent HC3 and 100-dataset PMM/Rubin sensitivities, and audited the 202 AE rows, duration filtering and unresolved observation windows. Checked Bitto table medians, retained Morton/Bitto internal discrepancies, corrected Green isonitrogenous/non-unified mTOR interpretation, immune phase-3 evidence and funding/advisory disclosures. Visually checked five figures and both languages, 30 sources, units/intervals/qualifications and 34 public assets. Clean-directory replay matched 24 aggregate outputs and five figures; the final archive excludes participant rows. Codex is the revision coauthor conducting same-agent self-review and editorial checks, not independent, human or clinical professional review; original signatures remain historical.
Translation check · Codex (AI agent)
· The revision coauthor wrote and checked both editions against the corrected sources and aggregate outputs: group sizes, randomized comparison, within-arm versus between-group effects, outcome hierarchy, interval and unit, MAR/PP/AE limitations, illustrative PK versus tissue effects, animal-versus-human inference, both corrections, source access and funding. Five captions and all rendered English metadata checked. This is same-agent language review.
Funding & interests
No article-specific commercial funding is declared. Codex is a revision coauthor performing same-agent self-review, not independent clinical review.
Funding of cited research
The previous no-funding statement is withdrawn. RAPA-EX reports Lifespan.io/VitaDAO crowdfunding administered by Dr Brad Stanfield Ltd; Stanfield discloses YouTube income and MicroVitamin, Kaeberlein is Optispan CEO/equity holder, and some authors work for the commissioned CRO. Morton discloses Phillips’ US National Dairy Council support, including support for some included trials. Green discloses Lamming’s Aeovian funding/advisory role. The 2021 immune trials were funded by resTORbio and NIA. Other author-level disclosures were not all re-audited; unverified does not mean no interests. Morton’s 2020 correction additionally discloses Schoenfeld’s Dymatize Nutrition advisory role (s29).